Human Disease



Our publications and citations can be available at below


27. Jianing Gao, Changlin Wan, Huan Zhang, Ao Li, Qiguang Zang, Rongjun Ban, Asim Ali, Zhenghua Yu, Qinghua Shi, Xiaohua Jiang and Yuanwei Zhang (2017). Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data. BMC Bioinformatics 18(1):436. doi: 10.1186/s12859-017-1833-3. (IF= 2.448) [pubmed][PDF]

26. Manzoor, H.#, I. Bukhari, M. Wajid, Y. Zhang, H. Zhang, N. Bruggemann, C. Klein, Q. Shi* and S. Naz* (2017). A Novel APTX Variant and Ataxia with Oculomotor Apraxia Type 1. J Clin Neurol 13(3): 303-305. (IF= 2.593) [pubmed][PDF]

25. Li, G.#, F. Iqbal#, L. Wang, Z. Xu, X. Che, W. Yu, L. Shi, T. Guo, G. Zhou, X. Jiang, H. Zhang, Y. Zhang* and D. Yu* (2017). Meiotic defects and decreased expression of genes located around the chromosomal breakpoint in the testis of a patient with a novel 46,X,t(Y;1)(p11.3;p31) translocation. Int J Mol Med 40(2): 367-377. (IF= 2.341) [pubmed][PDF]

24. Jiang, L.#, T. Li#, X. Zhang, B. Zhang, C. Yu, Y. Li, S. Fan, X. Jiang, T. Khan, Q. Hao, P. Xu, D. Nadano, M. Huleihel, E. Lunenfeld, P. J. Wang, Y. Zhang* and Q. Shi* (2017). RPL10L Is Required for Male Meiotic Division by Compensating for RPL10 during Meiotic Sex Chromosome Inactivation in Mice. Curr Biol 27(10): 1498-1505 e1496. (IF=8.851) [pubmed][PDF]

23. Bukhari, I.#, G. Li#, L. Wang, F. Iqbal, H. Zhang, J. Zhu, H. Liu, X. Fang, N. M. Al-Daghri, H. J. Cooke, Y. Zhang* and X. Jiang* (2017). Effects of androgen receptor mutation on testicular histopathology of patient having complete androgen insensitivity. J Mol Histol 48(3): 159-167. (IF= 2.362) [pubmed][PDF]

22. Changlin Wan, Jianing Gao, Huan Zhang, Xiaohua Jiang, Qiguang Zang2, Rongjun Ban1, Yuanwei Zhang,* and Qinghua Shi,*. CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data. Bioinformatics. 2017 Feb 8. doi: 10.1093/bioinformatics/btx066. (IF=7.307) [pubmed][PDF]


21. Zhang, Y.#, Q. Zang#, H. Zhang#, R. Ban, Y. Yang, F. Iqbal, A. Li* and Q. Shi* (2016). DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data. Nucleic Acids Res 44(W1): W166-175. (IF=10.162) [pubmed][PDF]

20. Zhang, Y.#, Q. Zang#, B. Xu, W. Zheng, R. Ban, H. Zhang, Y. Yang, Q. Hao, F. Iqbal, A. Li* and Q. Shi* (2016). IsomiR Bank: a research resource for tracking IsomiRs. Bioinformatics 32(13): 2069-2071. (IF=7.307) [pubmed][PDF]

19. Xu, B.#*, Y. W. Zhang#, S. X. Zheng#, X. H. Tong and Y. S. Liu (2016). Expression Profile of microRNAs and Their Targeted Pathways in Human Ovaries Detected by Next-Generation Small RNA Sequencing. DNA Cell Biol 35(5): 226-234. (IF=10.162)(IF=2.236) [pubmed][PDF]


18. Zhang, Y.#, Z. Yu#, R. Ban#, H. Zhang#, F. Iqbal, A. Zhao, A. Li* and Q. Shi* (2015). DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data. Nucleic Acids Res 43(W1): W289-294. (IF=10.162) [pubmed][PDF]

17. Zhang, L.#, P. Wei#, X. Shen#, Y. Zhang, B. Xu, J. Zhou, S. Fan, Z. Hao, H. Shi, X. Zhang, R. Kong, L. Xu, J. Gao, D. Zou* and C. Liang* (2015). MicroRNA Expression Profile in Penile Cancer Revealed by Next-Generation Small RNA Sequencing. PLoS One 10(7): e0131336. (IF=2.806) [pubmed][PDF]

16. Xu, B.#*, Y. W. Zhang#, X. H. Tong and Y. S. Liu (2015). Characterization of microRNA profile in human cumulus granulosa cells: Identification of microRNAs that regulate Notch signaling and are associated with PCOS. Mol Cell Endocrinol 404(C): 26-36. (IF=3.754) [pubmed][PDF]

15. Wang, L.#, Z. Xu#, F. Iqbal, L. Zhong, Y. Zhang, C. Wu, G. Zhou, H. Jiang, I. Bukhari, H. J. Cooke and Q. Shi* (2015). Decreased XY recombination and disturbed meiotic prophase I progression in an infertile 48, XYY, +sSMC man. Chromosome Res 23(2): 267-276. (IF=2.385) [pubmed][PDF]

14. Wang, L. #, F. Iqbal*, G. Li, X. Jiang, I. Bukhari, H. Jiang, Q. Yang, L. Zhong, Y. Zhang, J. Hua, H. J. Cooke and Q. Shi* (2015). Abnormal meiotic recombination with complex chromosomal rearrangement in an azoospermic man. Reprod Biomed Online 30(6): 651-658. (IF=3.249) [pubmed][PDF]

13. Jiang, X.#, T. Ma#, Y. Zhang, H. Zhang, S. Yin, W. Zheng, L. Wang, Z. Wang, M. Khan, S. W. Sheikh, I. Bukhari, F. Iqbal, H. J. Cooke and Q. Shi* (2015). Specific deletion of Cdh2 in Sertoli cells leads to altered meiotic progression and subfertility of mice. Biol Reprod 92(3): 79. (IF=3.432) [pubmed][PDF]

12. Hua, J.#, B. Xu#, Y. Yang, R. Ban, F. Iqbal, H. J. Cooke, Y. Zhang* and Q. Shi* (2015). Follicle Online: an integrated database of follicle assembly, development and ovulation. Database (Oxford) 2015: bav036. (IF=3.290) [pubmed][PDF]


11. Zhang, H.#, X. Jiang#, Y. Zhang, B. Xu, J. Hua, T. Ma, W. Zheng, R. Sun, W. Shen, H. J. Cooke, Q. Hao, J. Qiao and Q. Shi* (2014). microRNA 376a regulates follicle assembly by targeting Pcna in fetal and neonatal mouse ovaries. Reproduction 148(1): 43-54. (IF=3.100) [pubmed][PDF]

10. Yao, Y.#, L. Ma, Q. Jia, W. Deng, Z. Liu, Y. Zhang, J. Ren, Y. Xue, H. Jia* and Q. Yang* (2014). Systematic characterization of small RNAome during zebrafish early developmental stages. BMC Genomics 15: 117. (IF=3.729) [pubmed][PDF]

9. Wang, Z.#, H. Yin, Y. Zhang, Y. Feng, Z. Yan, X. Jiang, I. Bukhari, F. Iqbal, H. J. Cooke and Q. Shi* (2014). miR-214-mediated downregulation of RNF8 induces chromosomal instability in ovarian cancer cells. Cell Cycle 13(22): 3519-3528. (IF=3.530) [pubmed]

8. Tong, X. H.#, B. Xu#, Y. W. Zhang, Y. S. Liu and C. H. Ma* (2014). Research resources: comparative microRNA profiles in human corona radiata cells and cumulus oophorus cells detected by next-generation small RNA sequencing. PLoS One 9(9): e106706. (IF=2.806) [pubmed][PDF]

7. Jiang, X.#, H. Zhang#, S. Yin, Y. Zhang, W. Yang, W. Zheng, L. Wang, Z. Wang, I. Bukhari, H. J. Cooke, F. Iqbal and Q. Shi* (2014). Specific deficiency of Plzf paralog, Zbtb20, in Sertoli cells does not affect spermatogenesis and fertility in mice. Sci Rep 4: 7062. (IF=4.259) [pubmed][PDF]


6. Zhang, Y.#, L. Zhong#, B. Xu#, Y. Yang#, R. Ban, J. Zhu, H. J. Cooke, Q. Hao and Q. Shi* (2013). SpermatogenesisOnline 1.0: a resource for spermatogenesis based on manual literature curation and genome-wide data mining. Nucleic Acids Res 41(Database issue): D1055-1062. (IF=10.162) [pubmed][PDF]

5. Yang, Q.#, J. Hua#, L. Wang, B. Xu, H. Zhang, N. Ye, Z. Zhang, D. Yu, H. J. Cooke, Y. Zhang* and Q. Shi* (2013). MicroRNA and piRNA profiles in normal human testis detected by next generation sequencing. PLoS One 8(6): e66809. (IF=2.806) [pubmed][PDF]


4. Zhang, Y.#, B. Xu#, Y. Yang, R. Ban, H. Zhang, X. Jiang, H. J. Cooke, Y. Xue* and Q. Shi* (2012). CPSS: a computational platform for the analysis of small RNA deep sequencing data. Bioinformatics 28(14): 1925-1927. (IF=7.307) [pubmed][PDF]

3. Chen, D.#, Y. Zhang, Q. Yi, Y. Huang, H. Hou, Y. Zhang, Q. Hao, H. J. Cooke, L. Li, Q. Sun and Q. Shi* (2012). Regulation of asymmetrical cytokinesis by cAMP during meiosis I in mouse oocytes. PLoS One 7(1): e29735.(IF=2.806) [pubmed][PDF]


2. Zhang, Y.#, Y. Yang#, H. Zhang#, X. Jiang#, B. Xu, Y. Xue, Y. Cao, Q. Zhai, Y. Zhai, M. Xu, H. J. Cooke and Q. Shi* (2011). Prediction of novel pre-microRNAs with high accuracy through boosting and SVM. Bioinformatics 27(10): 1436-1437. (IF=7.307) [pubmed][PDF]

1. Xu, B.#, J. Hua#, Y. Zhang, X. Jiang, H. Zhang, T. Ma, W. Zheng, R. Sun, W. Shen, J. Sha, H. J. Cooke and Q. Shi* (2011). Proliferating cell nuclear antigen (PCNA) regulates primordial follicle assembly by promoting apoptosis of oocytes in fetal and neonatal mouse ovaries. PLoS One 6(1): e16046. (IF=2.806) [pubmed][PDF]